- Washington-Idaho border to the Salmon River.
- Salmon River to Hells Canyon Dam.
- Downstream from Whitebird Creek.
- Whitebird Creek to Little Salmon River.
- Little Salmon River to Vinegar Creek.
- Vinegar Creek to South Fork Salmon River.
- South Fork Salmon River to Middle Fork Salmon River.
- Middle Fork Salmon River to North Fork Salmon River.
- North Fork Salmon River to Lemhi River.
- Lemhi River to Pahsimeroi River.
- Pahsimeroi River to East Fork Salmon River.
- East Fork Salmon to Sawtooth Weir.