- Clearwater River from its mouth upstream to the Memorial Bridge of U.S. Highway 12 at Lewiston.
- Clearwater River main stem and Middle Fork from the Memorial Bridge of U.S. Highway 12 at Lewiston upstream to Clear Creek.
- North Fork Clearwater River from its mouth upstream to Dworshak Dam.
- South Fork Clearwater River from its mouth upstream to the confluence of American and Red rivers.
- Salmon River from its mouth upstream to the posted boundary 100 yards downstream of Sawtooth Hatchery.
- Little Salmon River from its mouth upstream to the U.S. Highway 95 bridge near Smokey Boulder Road.
- Snake River from the Washington state line at the confluence of the Snake and Clearwater rivers upstream to Hells Canyon Dam.
